CV

Education

• B.S. in Mechatronic Engineering, Zhejiang University (ZJU), 2014
• M.S. in Electrical and Electronic Engineering, The University of Hong Kong (HKU), 2016
• Ph.D. in Computer Science and Engineering, The Chinese University of Hong Kong (CUHK), 2022

Work experience

• 2016-2017: Technical Product Manager
  • DJI Innovation Limited Company
  • Department: New Product Introduction
• 2017-2018: Product Engineer
  • TP-LINK Limited Company
  • Department: Dept. of Oversea Products

Publications

A long non-coding RNA signature for diagnostic prediction of sepsis upon ICU admission

Xueyan Liu#, Xubin Zheng#, Jun Wang#, Ning Zhang, Kwong-Sak Leung, Xiufeng Ye, and Lixin Cheng. A long non-coding RNA signature for diagnostic prediction of sepsis upon ICU admission. Clinical and Translational Medicine, 2020.

Long non-coding RNA Pairs to Assist in Diagnosing Sepsis

Xubin Zheng, Kwong-Sak Leung, Man-Hon Wong, and Lixin Cheng. Long non-coding RNA Pairs to Assist in Diagnosing Sepsis. BMC Genomics, 2021.

Evaluating the consistency of gene methylation in liver cancer using bisulfite sequencing data

Xubin Zheng#, Qiong Wu#, Haonan Wu#, Man-Hon Wong, Kwong Sak Leung, Xueyan Liu, and Lixin Cheng. Evaluating the consistency of gene methylation in liver cancer using bisulfite sequencing data. Frontiers in Cell and Developmental Biology, 2021.

A robust and generalizable immune-related signature for sepsis diagnostics

Yueran Yang#, Yu Zhang#, Shuai Li, Xubin Zheng, Man-Hon Wong, Kwong-Sak Leung, and Lixin Cheng. A robust and generalizable immune-related signature for sepsis diagnostics. IEEE/ACM Transactions in Computational Biology and Bioinformatics, 2021.

Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia

Ran Wang, Xubin Zheng, Jun Wang, Shibiao Wan, Fangda Song, Man-Hon Wong, Kwong-Sak Leung, and Lixin Cheng. Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia. Briefings in Bioinformatics, 2022.

meGPS: a multi-omics signature for hepatocellular carcinoma detection integrating methylome and transcriptome data

Qiong Wu#, Xubin Zheng#, Kwong-Sak Leung, Man-Hon Wong, Stephen Kwok-Wing Tsui, and Lixin Cheng. meGPS: a multi-omics signature for hepatocellular carcinoma detection integrating methylome and transcriptome data. Bioinformatics, 2022.

Whole transcriptome analysis reveals non-coding RNA’s competing endogenous gene pairs as novel form of motifs in serous ovarian cancer

Haili Li#, Xubin Zheng#, Jing Gao, Kwong-Sak Leung, Man-Hon Wong, Shu Yang, Yakun Liu, Ming Dong, Huimin Bai, Xiufeng Ye, and Lixin Cheng. Whole transcriptome analysis reveals non-coding RNA’s competing endogenous gene pairs as novel form of motifs in serous ovarian cancer. Computers in Biology and Medicine, 2022.

GPGPS: a robust prognostic gene pair signature of glioma ensembling IDH mutation and 1p/19q co-deletion

Lixin Cheng#, Haonan Wu#, Xubin Zheng, Ning Zhang, Pengfei Zhao, Ran Wang, Qiong Wu, Tao Liu, Xiaojun Yang, and Qingshan Geng. GPGPS: a robust prognostic gene pair signature of glioma ensembling IDH mutation and 1p/19q co-deletion. Bioinformatics, 2023.

bvnGPS: a generalizable diagnostic model for acute bacterial and viral infection using integrative host transcriptomics and pretrained neural networks

Qizhi Li#, Xubin Zheng#, Jize Xie#, Ran Wang, Mengyao Li, Man-Hon Wong, Kwong-Sak Leung, Shuai Li, Qingshan Geng*, and Lixin Cheng. bvnGPS: a generalizable diagnostic model for acute bacterial and viral infection using integrative host transcriptomics and pretrained neural networks. Bioinformatics, 2023.

Deciphering associations between gut microbiota and clinical factors using microbial modules

Ran Wang, Xubin Zheng, Fangda Song, Man Hon Wong, Kwong Sak Leung, and Lixin Cheng. Deciphering associations between gut microbiota and clinical factors using microbial modules. Bioinformatics, 2023.

Diagnostic Prediction of portal vein thrombosis in chronic cirrhosis patients using data-driven precision medicine model

Ying Li#, Jing Gao#, Xubin Zheng#, Guole Nie, Jican Qin, Haiping Wang, Tao He, Åsa Wheelock, Chuan-Xing Li, Lixin Cheng, Xun Li, Diagnostic Prediction of portal vein thrombosis in chronic cirrhosis patients using data-driven precision medicine model, Briefings in Bioinformatics, 2024.

Intra-sample reversed pairs based on differentially ranked genes reveal biosignature for ovarian cancer

Pengfei Zhao#, Dian Meng#, Zunkai Hu, Yining Liang, Yating Feng, Tongjie Sun, Lixin Cheng, Xubin Zheng, Haili Li, Intra-sample reversed pairs based on differentially ranked genes reveal biosignature for ovarian cancer. Computers in Biology and Medicine, 2024.

Fusionmamba: Dynamic feature enhancement for multimodal image fusion with mamba

Xinyu Xie, Yawen Cui, Chio-In Ieong, Tao Tan, Xiaozhi Zhang, Xubin Zheng, Zitong Yu. Fusionmamba: Dynamic feature enhancement for multimodal image fusion with mamba. Preprint on arXiv, 2024.

Deep learning model to discriminate diverse infection types based on pairwise analysis of host gene expression

Jize Xie#, Xubin Zheng#, Jianlong Yan#, Qizhi Li, Nana Jin, Shuojia Wang, Pengfei Zhao, Shuai Li, Wanfu Ding, Lixin Cheng, Qingshan Geng. Deep learning model to discriminate diverse infection types based on pairwise analysis of host gene expression. iScience, 2024.

scCaT: an explainable capsulating architecture for sepsis diagnosis transferring from single-cell RNA sequencing

Xubin Zheng, Dian Meng, Duo Chen, Wan-Ki Wong, Ka-Ho To, Lei Zhu, Jiafei Wu, Yining Liang, Kwong-Sak Leung, Man-Hon Wong, Lixin Cheng. scCaT: an explainable capsulating architecture for sepsis diagnosis transferring from single-cell RNA sequencing. bioRxiv, 2024.

Service and leadership

• Committee member of Computational Biology and Bioinformatics, Chinese Society of Biotechnology.