Published in Bioinformatics, 2023
Recommended citation: Ran Wang, Xubin Zheng, Fangda Song, Man Hon Wong, Kwong Sak Leung, and Lixin Cheng. Deciphering associations between gut microbiota and clinical factors using microbial modules. Bioinformatics, 2023. https://doi.org/10.1093/bioinformatics/btad213
Published in Bioinformatics, 2023
Recommended citation: Qizhi Li#, Xubin Zheng#, Jize Xie#, Ran Wang, Mengyao Li, Man-Hon Wong, Kwong-Sak Leung, Shuai Li, Qingshan Geng*, and Lixin Cheng. bvnGPS: a generalizable diagnostic model for acute bacterial and viral infection using integrative host transcriptomics and pretrained neural networks. Bioinformatics, 2023. https://doi.org/10.1093/bioinformatics/btad109
Published in Bioinformatics, 2023
Recommended citation: Lixin Cheng#, Haonan Wu#, Xubin Zheng, Ning Zhang, Pengfei Zhao, Ran Wang, Qiong Wu, Tao Liu, Xiaojun Yang, and Qingshan Geng. GPGPS: a robust prognostic gene pair signature of glioma ensembling IDH mutation and 1p/19q co-deletion. Bioinformatics, 2023. https://doi.org/10.1093/bioinformatics/btac850
Published in Computers in Biology and Medicine, 2022
In this paper, we proposed denoised individualized pairwise analysis of gene expression (deiPAGE).
Recommended citation: Haili Li#, Xubin Zheng#, Jing Gao, Kwong-Sak Leung, Man-Hon Wong, Shu Yang, Yakun Liu, Ming Dong, Huimin Bai, Xiufeng Ye, and Lixin Cheng. Whole transcriptome analysis reveals non-coding RNA’s competing endogenous gene pairs as novel form of motifs in serous ovarian cancer. Computers in Biology and Medicine, 2022. https://doi.org/10.1016/j.compbiomed.2022.105881
Published in Bioinformatics, 2022
Recommended citation: Qiong Wu#, Xubin Zheng#, Kwong-Sak Leung, Man-Hon Wong, Stephen Kwok-Wing Tsui, and Lixin Cheng. meGPS: a multi-omics signature for hepatocellular carcinoma detection integrating methylome and transcriptome data. Bioinformatics, 2022. https://doi.org/10.1093/bioinformatics/btac379
Published in Briefings in Bioinformatics, 2022
Recommended citation: Ran Wang, Xubin Zheng, Jun Wang, Shibiao Wan, Fangda Song, Man-Hon Wong, Kwong-Sak Leung, and Lixin Cheng. Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia. Briefings in Bioinformatics, 2022. https://doi.org/10.1093/bib/bbac002
Published in IEEE/ACM Transactions in Computational Biology and Bioinformatics, 2021
Recommended citation: Yueran Yang#, Yu Zhang#, Shuai Li, Xubin Zheng, Man-Hon Wong, Kwong-Sak Leung, and Lixin Cheng. A robust and generalizable immune-related signature for sepsis diagnostics. IEEE/ACM Transactions in Computational Biology and Bioinformatics, 2021. https://ieeexplore.ieee.org/document/9523768
Published in Frontiers in Cell and Developmental Biology, 2021
Recommended citation: Xubin Zheng#, Qiong Wu#, Haonan Wu#, Man-Hon Wong, Kwong Sak Leung, Xueyan Liu, and Lixin Cheng. Evaluating the consistency of gene methylation in liver cancer using bisulfite sequencing data. Frontiers in Cell and Developmental Biology, 2021. https://doi.org/10.3389/fcell.2021.671302
Published in BMC Genomics, 2021
In this paper, we proposed individualized pairwise analysis of gene expression (iPAGE).
Recommended citation: Xubin Zheng, Kwong-Sak Leung, Man-Hon Wong, and Lixin Cheng. Long non-coding RNA Pairs to Assist in Diagnosing Sepsis. BMC Genomics, 2021. https://doi.org/10.1186/s12864-021-07576-4
Published in Clinical and Translational Medicine, 2020
Recommended citation: Xueyan Liu#, Xubin Zheng#, Jun Wang#, Ning Zhang, Kwong-Sak Leung, Xiufeng Ye, and Lixin Cheng. A long non-coding RNA signature for diagnostic prediction of sepsis upon ICU admission. Clinical and Translational Medicine, 2020. https://doi.org/10.1002/ctm2.123